A statement by Laolu Akande, Senior Special Assistant to the President on Media and Publicity said.
Daura has been directed to hand over to the most senior officer of the State Security Service until further notice.
Alhaji Ibrahim Idris, has exonerated the Nigeria Police Force from Tuesday's blockage of the National Assembly (NASS) by security operatives.
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Speaking on the development while fielding questions from State House Correspondents after he held a closed door meeting with acting President Yemi Osinbajo at the Presidential Villa, Idris said the police would soon issue a statement on the incident.
Seiyefa, who hails from Bayelsa State, had earlier served as the Director of the Institute of Security Studies (ISS), before he was transferred to the DSS headquarters.
Saraki was also expected to meet with Mahmoud Yakubu, chairman of the Independent National Electoral Commission (INEC).
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Osinbajo described the siege to NASS as an unlawful act done without the knowledge of the presidency.
The operatives turned away cars of lawmakers and other National Assembly staff.
It is not enough to take populist approach of easing Daura out of office.
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Acting leader Yemi Osinbajo sacks head of the state security agency Lawal Musa Daura hours after masked security agents barred lawmakers from entering the parliament in capital Abuja.